API reference

This documents the application programming and command line interfaces of the PhasorPy library version 0.3.dev.

Note

The PhasorPy library is in its early stages of development. It is not nearly feature complete. Large, backwards-incompatible changes may occur between revisions.

• phasorpy
  • __version__
  • versions()
• phasorpy.phasor
  • lifetime_fraction_from_amplitude()
  • lifetime_fraction_to_amplitude()
  • lifetime_from_frequency()
  • lifetime_to_frequency()
  • lifetime_to_signal()
  • phasor_at_harmonic()
  • phasor_calibrate()
  • phasor_center()
  • phasor_divide()
  • phasor_filter()
  • phasor_from_apparent_lifetime()
  • phasor_from_fret_acceptor()
  • phasor_from_fret_donor()
  • phasor_from_lifetime()
  • phasor_from_polar()
  • phasor_from_signal()
  • phasor_multiply()
  • phasor_semicircle()
  • phasor_threshold()
  • phasor_to_apparent_lifetime()
  • phasor_to_complex()
  • phasor_to_polar()
  • phasor_to_principal_plane()
  • phasor_to_signal()
  • phasor_transform()
  • polar_from_apparent_lifetime()
  • polar_from_reference()
  • polar_from_reference_phasor()
  • polar_to_apparent_lifetime()
• phasorpy.cursors
  • mask_from_circular_cursor()
  • mask_from_elliptic_cursor()
  • mask_from_polar_cursor()
  • pseudo_color()
• phasorpy.components
  • graphical_component_analysis()
  • two_fractions_from_phasor()
• phasorpy.plot
  • PhasorPlot
    • PhasorPlot.ax
    • PhasorPlot.circle()
    • PhasorPlot.components()
    • PhasorPlot.contour()
    • PhasorPlot.cursor()
    • PhasorPlot.dataunit_to_point
    • PhasorPlot.fig
    • PhasorPlot.hist2d()
    • PhasorPlot.imshow()
    • PhasorPlot.line()
    • PhasorPlot.plot()
    • PhasorPlot.polar_cursor()
    • PhasorPlot.polar_grid()
    • PhasorPlot.save()
    • PhasorPlot.semicircle()
    • PhasorPlot.show()
  • PhasorPlotFret
  • plot_phasor()
  • plot_phasor_image()
  • plot_polar_frequency()
  • plot_signal_image()
• phasorpy.io
  • phasor_from_ometiff()
  • phasor_from_simfcs_referenced()
  • phasor_to_ometiff()
  • phasor_to_simfcs_referenced()
  • read_b64()
  • read_bh()
  • read_bhz()
  • read_fbd()
  • read_flif()
  • read_ifli()
  • read_lsm()
  • read_ptu()
  • read_sdt()
  • read_z64()
• phasorpy.color
  • float2int()
  • wavelength2rgb()
  • CATEGORICAL
  • SRGB_SPECTRUM
• phasorpy.datasets
  • fetch()
  • REPOSITORIES
• phasorpy.utils
  • anscombe_transformation()
  • anscombe_transformation_inverse()
  • number_threads()
  • spectral_vector_denoise()
• phasorpy._utils
  • chunk_iter()
  • dilate_coordinates()
  • kwargs_notnone()
  • parse_harmonic()
  • parse_kwargs()
  • phasor_from_polar_scalar()
  • phasor_to_polar_scalar()
  • scale_matrix()
  • sort_coordinates()
  • update_kwargs()
• phasorpy._phasorpy
  • _gaussian_signal()
  • _median_filter_2d()
  • _phasor_from_lifetime()
  • _phasor_from_signal()
  • _phasor_from_signal_vector()
  • _signal_denoise_vector()
• Command line interface
  • python -m phasorpy
    • fetch
    • fret
    • versions