API reference

This documents the application programming and command-line interfaces of the PhasorPy library version 0.11.

Note

PhasorPy is still under active development, and changes in new releases may require updates to existing code.

• phasorpy
  • __version__
• phasorpy.phasor
  • phasor_center()
  • phasor_combine()
  • phasor_divide()
  • phasor_from_polar()
  • phasor_from_signal()
  • phasor_multiply()
  • phasor_nearest_neighbor()
  • phasor_normalize()
  • phasor_to_complex()
  • phasor_to_polar()
  • phasor_to_principal_plane()
  • phasor_to_signal()
  • phasor_transform()
• phasorpy.lifetime
  • lifetime_fraction_from_amplitude()
  • lifetime_fraction_to_amplitude()
  • lifetime_from_frequency()
  • lifetime_to_frequency()
  • lifetime_to_signal()
  • phasor_at_harmonic()
  • phasor_calibrate()
  • phasor_from_apparent_lifetime()
  • phasor_from_fret_acceptor()
  • phasor_from_fret_donor()
  • phasor_from_lifetime()
  • phasor_semicircle()
  • phasor_semicircle_intersect()
  • phasor_to_apparent_lifetime()
  • phasor_to_lifetime_search()
  • phasor_to_normal_lifetime()
  • polar_from_apparent_lifetime()
  • polar_from_reference()
  • polar_from_reference_phasor()
  • polar_to_apparent_lifetime()
• phasorpy.filter
  • phasor_filter_gaussian()
  • phasor_filter_median()
  • phasor_filter_pawflim()
  • phasor_threshold()
  • signal_filter_gaussian()
  • signal_filter_median()
  • signal_filter_ncpca()
  • signal_filter_svd()
• phasorpy.component
  • phasor_component_concentration()
  • phasor_component_fit()
  • phasor_component_fraction()
  • phasor_component_graphical()
  • phasor_component_mvc()
  • phasor_from_component()
• phasorpy.cluster
  • phasor_cluster_gmm()
• phasorpy.cursor
  • mask_from_circular_cursor()
  • mask_from_elliptic_cursor()
  • mask_from_polar_cursor()
  • pseudo_color()
• phasorpy.plot
  • LifetimePlots
    • LifetimePlots.show()
  • PhasorPlot
    • PhasorPlot.arrow()
    • PhasorPlot.ax
    • PhasorPlot.circle()
    • PhasorPlot.components()
    • PhasorPlot.contour()
    • PhasorPlot.cursor()
    • PhasorPlot.dataunit_to_point
    • PhasorPlot.fig
    • PhasorPlot.hist2d()
    • PhasorPlot.imshow()
    • PhasorPlot.legend()
    • PhasorPlot.line()
    • PhasorPlot.plot()
    • PhasorPlot.polar_cursor()
    • PhasorPlot.polar_grid()
    • PhasorPlot.save()
    • PhasorPlot.semicircle()
    • PhasorPlot.show()
  • PhasorPlotFret
  • plot_histograms()
  • plot_image()
  • plot_phasor()
  • plot_phasor_image()
  • plot_polar_frequency()
  • plot_signal_image()
• phasorpy.io
  • lifetime_from_lif()
  • phasor_from_flimlabs_json()
  • phasor_from_ifli()
  • phasor_from_lif()
  • phasor_from_ometiff()
  • phasor_from_simfcs_referenced()
  • phasor_to_ometiff()
  • phasor_to_simfcs_referenced()
  • signal_from_b64()
  • signal_from_bh()
  • signal_from_bhz()
  • signal_from_czi()
  • signal_from_fbd()
  • signal_from_flif()
  • signal_from_flimlabs_json()
  • signal_from_imspector_tiff()
  • signal_from_lif()
  • signal_from_lsm()
  • signal_from_ometiff()
  • signal_from_pqbin()
  • signal_from_ptu()
  • signal_from_sdt()
  • signal_from_z64()
• phasorpy.color
  • float2int()
  • wavelength2rgb()
  • CATEGORICAL
  • SRGB_SPECTRUM
• phasorpy.experimental
  • anscombe_transform()
  • anscombe_transform_inverse()
• phasorpy.datasets
  • fetch()
  • REPOSITORIES
• phasorpy.utils
  • logger()
  • number_threads()
  • versions()
• phasorpy._utils
  • chunk_iter()
  • dilate_coordinates()
  • init_module()
  • kwargs_notnone()
  • parse_harmonic()
  • parse_kwargs()
  • parse_signal_axis()
  • parse_skip_axis()
  • phasor_from_polar_scalar()
  • phasor_to_polar_scalar()
  • scale_matrix()
  • sort_coordinates()
  • squeeze_dims()
  • update_kwargs()
  • xarray_metadata()
• phasorpy._phasorpy
  • _flimlabs_mean()
  • _flimlabs_signal()
  • _gaussian_signal()
  • _lifetime_search_2()
  • _mean_value_coordinates()
  • _median_filter_2d()
  • _nearest_neighbor_2d()
  • _phasor_from_lifetime()
  • _phasor_from_signal()
  • _phasor_from_signal_vector()
  • _signal_denoise_vector()
• Command-line interface
  • python -m phasorpy
    • fetch
    • fret
    • lifetime
    • versions